Information for 6-MTWTTAMYYASTTTTT (Motif 10)

G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A C G T A C G T A A T C G A C G T C T A G C T A G A C G T A C G T C G T A C G T A G C T A C G T A A C G T
p-value:1e-10
log p-value:-2.382e+01
Information Content per bp:1.854
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.6 +/- 14.3bp
Average Position of motif in Background56.6 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0108.1_Msx3/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
NNNTTAATTGGTTTTN
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-MTWTTAMYYASTTTTT
GANGTTAACTAGTTTNN
 A C G T G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
NNNTTAATTGGTTTTT
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0088.1_Isl2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
AAATTAATTGATTTNG
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

PH0120.1_Nkx6-3/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--MTWTTAMYYASTTTTT
GAAAATTAATTACTTTG-
 A C G T A C G T G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C T A G T G C A G C A T C G T A G C T A C G A T G A C T C G T A C G T A C G A T A C G T C T G A T G A C A G C T A C G T A G C T A C T G A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
GNNTTAATTGGTTGTT
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0101.1_Lmx1b/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--MTWTTAMYYASTTTTT
AGTTTTTAATTAATTTG-
 A C G T A C G T G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
--NTTATTGATTTTTT
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT
--TTGACCTANTTATN
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:MTWTTAMYYASTTTTT-
NATTTAAGTACTTANNA
 G T C A A C G T C G A T A C G T A C G T C G T A G T C A A G T C A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A