Information for 2-AGGTGGTTGCCAT (Motif 3)

C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
T G C A C G A T A C T G T C A G A G T C C G T A C T G A A G T C A G T C C G T A A T G C A G T C A C G T
p-value:1e-11
log p-value:-2.698e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 18.6bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGTGGTTGCCAT---
NGTAGGTTGGCATNNN
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGTGGTTGCCAT
AGGTGNCAGACAG
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ZBTB7A/MA0750.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGGTTGCCAT
TCGGTGGTCGCN--
 A C G T C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGGTGGTTGCCAT
AACAGGTGNT------
 A C G T A C G T A C G T C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGGTGGTTGCCAT
NTCGGTGGTCGC---
 A C G T A C G T C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTGGTTGCCAT
AGGTGHCAGACA-
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AGGTGGTTGCCAT
----GGTTGGCAT
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGTGGTTGCCAT-
--BTGABTGACAGS
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGTGGTTGCCAT-----
VCAKCTGGNNNCCAGMTGBN
 A C G T A C G T C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGGTGGTTGCCAT-
--NTGATTGACAGN
 C G T A A C T G A T C G A C G T A C T G C T A G G A C T C G A T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G