Information for 9-GTGCATGCACACA (Motif 12)

C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
Reverse Opposite:
A G C T A C T G A G C T C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C
p-value:1e-6
log p-value:-1.511e+01
Information Content per bp:1.874
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 26.8bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF(NRF)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTGCATGCACACA
GCGCATGCGCAC-
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTGCATGCACACA
GCGCATGCGCAG-
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T

NRF1/MA0506.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTGCATGCACACA
GCGCCTGCGCA--
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGCATGCACACA
TTGCGTGCVA---
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GTGCATGCACACA
TACATGTGCACATAAAA-
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GTGCATGCACACA-
----ATGMATATDC
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTGCATGCACACA--
GACCACATTCATACAAT
 A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GTGCATGCACACA
GGACTGAATTCATGCC
 A C G T A C G T A C G T C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0044.1_Mtf1_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGCATGCACACA----
-NNTTTGCACACGGCCC
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGCATGCACACA
-TGCGTG------
 C T A G A C G T A C T G A G T C C G T A A C G T A C T G A G T C C G T A A G T C C T G A G T A C C T G A
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T