Information for 2-GAGACGATGG (Motif 10)

A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A G T C A T C G A G C T A T G C A C G T A G T C
p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif70.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets46.5 +/- 24.5bp
Average Position of motif in Background48.6 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAGACGATGG
AAAACAATGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGACGATGG---
CTCACACAATGGCGC
 A C G T A C G T A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGACGATGG-
-RAACAATGGN
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGACGATGG
--AACAAAGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGACGATGG
VRAACAATGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGACGATGG-
--GACAATGNN
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGACGATGG-
-GAACAATGGN
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGACGATGG
VRRACAAWGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGACGATGG
--RACAAWGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGACGATGG
AAAACAAAGG
 A C T G C G T A A T C G C T G A A T G C T C A G T G C A C G A T A C T G A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G