Information for 10-GCCCATCAACAGT (Motif 7)

A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
Reverse Opposite:
C G T A A T G C A C G T A C T G A G C T A C G T A C T G G T C A A G C T A C T G C T A G A C T G A T G C
p-value:1e-10
log p-value:-2.312e+01
Information Content per bp:1.808
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.4 +/- 28.0bp
Average Position of motif in Background44.7 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCCATCAACAGT
GGCCATTAAC---
 A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCCATCAACAGT-
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCCATCAACAGT--
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCCATCAACAGT
SCCTAGCAACAG-
 A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCCATCAACAGT--
TCACCCATCAATAAACA
 A C G T A C G T A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCCCATCAACAGT
TGTTKCCTAGCAACM--
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCCATCAACAGT
-CCAATCAA----
 A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCCATCAACAGT
-SCTGTCARCACC
 A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

TFAP4/MA0691.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCCCATCAACAGT-
----ATCAGCTGTT
 A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCCATCAACAGT
CCGCATAGCAACGGA
 A C G T A C G T A T C G A G T C A G T C A G T C C T G A A C G T A G T C C G T A T C G A A G T C C G T A A T C G G A C T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A