Information for 7-GGCAGAGSGCAGC (Motif 2)

A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
Reverse Opposite:
C T A G A T G C G C A T A T C G A G T C A T C G A G T C A G C T A G T C A C G T A C T G A T G C T G A C
p-value:1e-17
log p-value:-3.970e+01
Information Content per bp:1.756
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif218.6
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets57.7 +/- 25.1bp
Average Position of motif in Background44.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGAGSGCAGC----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGCAGAGSGCAGC
--CAAAGGTCAG-
 A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCAGAGSGCAGC
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGCAGAGSGCAGC-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCAGAGSGCAGC
AACAGATGGC---
 A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCAGAGSGCAGC
GTAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCAGAGSGCAGC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAGSGCAGC
TGTCAGGGGGCG--
 A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGAGSGCAGC
TGGGGCAAAGGTCA--
 A C G T A C G T A C G T A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCAGAGSGCAGC--
NNVDGGGYGGGGCYN
 A C T G T A C G A G T C C G T A A C T G C T G A C T A G A T G C A C T G A T G C C G T A A T C G A G T C A C G T A C G T
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A