Information for 9-GTCCAATGGA (Motif 16)

A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A G C A T A C G T A C T G A T C G C T G A G T A C
p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.859
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif15.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.8 +/- 28.2bp
Average Position of motif in Background53.4 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCCAATGGA
AGCCAATCGG
 A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTCCAATGGA
ACTAGCCAATCA-
 A C G T A C G T A C G T A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCCAATGGA
GAACAATGG-
 A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GTCCAATGGA
GGCAAAAGTCCAATAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCCAATGGA----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTCCAATGGA----
----AATGGAAAAT
 A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTCCAATGGA
GAACAATGGN
 A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTCCAATGGA
VRAACAATGG-
 A C G T A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTCCAATGGA--
NTGCCCANNGGTNA
 A C G T A C G T A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GTCCAATGGA----
----NNTGGAAANN
 A C T G A G C T A T G C A G T C G T C A C G T A A C G T C T A G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T