Information for 4-TCGTGCCAGCTCACTG (Motif 12)

A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C G T A C T G G T C A A C T G A G T C C G A T C A T G A C T G A G T C C G T A A T G C A C T G C G T A
p-value:1e-9
log p-value:-2.104e+01
Information Content per bp:1.918
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.6 +/- 16.7bp
Average Position of motif in Background53.6 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
--ATGCCAACC-----
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCGTGCCAGCTCACTG
ACTATGCCAACCTACC-
 A C G T A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
-CGTGCCAAG------
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
--TTGCCAAG------
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
---TGTCANYT-----
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
--GTGCCACGTCATCA
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T A C G T T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCGTGCCAGCTCACTG
NTATTGACAGCTNNTT-
 A C G T A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TCGTGCCAGCTCACTG
GTATTGACAGCTNNTT-
 A C G T A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TCGTGCCAGCTCACTG
--ATGCCCACC-----
 A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCGTGCCAGCTCACTG
GATATTGACAGCTGCGT-
 A C G T A C G T A C G T A G T C A T C G A C G T A C T G A G T C G T A C C G T A C T A G A G T C A C G T A G T C G T C A A G T C C G A T A C T G
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T A C G T