Information for 4-CTAGAGGTCA (Motif 2)

A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A
Reverse Opposite:
C G A T C A T G G T C A A G T C G T A C C G A T A G T C A C G T C G T A A C T G
p-value:1e-21
log p-value:-4.953e+01
Information Content per bp:1.870
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif44.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets57.8 +/- 19.6bp
Average Position of motif in Background49.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CTAGAGGTCA
--AGRGGTCA
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGGTCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTAGAGGTCA
--TRAGGTCA
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTAGAGGTCA----
-CAAAGGTCAAGGG
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTAGAGGTCA-----
NTNNNGGGGTCANGNNN
 A C G T A C G T A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTAGAGGTCA
----AGGTCA
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTAGAGGTCA-
-CAAAGGTCAG
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAGAGGTCA
ATCAAGGTCA
 A G T C A C G T C G T A A C T G C G T A A C T G A C T G C A G T G T A C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A