Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 783)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45633)	% of Background Sequences with Motif
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-86	-1.982e+02	0.0000	76.0	9.71%	136.9	0.30%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-31	-7.234e+01	0.0000	73.0	9.32%	749.2	1.63%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-24	-5.702e+01	0.0000	178.0	22.73%	4587.4	9.98%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-24	-5.677e+01	0.0000	235.0	30.01%	7028.2	15.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-24	-5.669e+01	0.0000	107.0	13.67%	1983.2	4.32%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-24	-5.666e+01	0.0000	160.0	20.43%	3888.0	8.46%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-22	-5.194e+01	0.0000	172.0	21.97%	4558.0	9.92%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-22	-5.150e+01	0.0000	103.0	13.15%	1989.1	4.33%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-21	-4.844e+01	0.0000	87.0	11.11%	1549.7	3.37%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-20	-4.805e+01	0.0000	125.0	15.96%	2873.4	6.25%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-20	-4.728e+01	0.0000	98.0	12.52%	1939.6	4.22%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-20	-4.625e+01	0.0000	122.0	15.58%	2825.5	6.15%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-20	-4.618e+01	0.0000	159.0	20.31%	4278.4	9.31%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-18	-4.315e+01	0.0000	93.0	11.88%	1889.8	4.11%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-18	-4.249e+01	0.0000	113.0	14.43%	2625.1	5.71%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-18	-4.188e+01	0.0000	106.0	13.54%	2389.1	5.20%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-17	-4.059e+01	0.0000	51.0	6.51%	667.9	1.45%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-16	-3.780e+01	0.0000	45.0	5.75%	559.7	1.22%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-16	-3.779e+01	0.0000	110.0	14.05%	2688.7	5.85%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-15	-3.599e+01	0.0000	291.0	37.16%	11066.2	24.08%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-14	-3.439e+01	0.0000	219.0	27.97%	7625.7	16.59%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-13	-3.124e+01	0.0000	64.0	8.17%	1259.0	2.74%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-13	-3.112e+01	0.0000	145.0	18.52%	4444.2	9.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-13	-3.069e+01	0.0000	121.0	15.45%	3443.1	7.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-11	-2.723e+01	0.0000	60.0	7.66%	1242.6	2.70%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-11	-2.709e+01	0.0000	40.0	5.11%	615.7	1.34%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-10	-2.390e+01	0.0000	53.0	6.77%	1106.5	2.41%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-10	-2.375e+01	0.0000	158.0	20.18%	5513.1	12.00%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-10	-2.354e+01	0.0000	88.0	11.24%	2442.8	5.32%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-9	-2.279e+01	0.0000	99.0	12.64%	2937.7	6.39%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-9	-2.096e+01	0.0000	319.0	40.74%	14014.8	30.50%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-8	-1.961e+01	0.0000	51.0	6.51%	1180.0	2.57%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-1.895e+01	0.0000	97.0	12.39%	3077.0	6.70%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-8	-1.874e+01	0.0000	131.0	16.73%	4633.7	10.08%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-8	-1.860e+01	0.0000	126.0	16.09%	4411.6	9.60%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.607e+01	0.0000	69.0	8.81%	2049.7	4.46%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-6	-1.556e+01	0.0000	111.0	14.18%	3952.3	8.60%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-6	-1.447e+01	0.0000	113.0	14.43%	4137.1	9.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.413e+01	0.0000	62.0	7.92%	1865.8	4.06%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-6	-1.395e+01	0.0000	60.0	7.66%	1791.6	3.90%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.337e+01	0.0000	83.0	10.60%	2835.7	6.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-5	-1.314e+01	0.0000	40.0	5.11%	1026.1	2.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.237e+01	0.0000	30.0	3.83%	685.0	1.49%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.206e+01	0.0000	51.0	6.51%	1522.8	3.31%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-5	-1.194e+01	0.0001	33.0	4.21%	811.2	1.77%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-5	-1.176e+01	0.0001	54.0	6.90%	1666.1	3.63%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.158e+01	0.0001	31.0	3.96%	751.1	1.63%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-5	-1.156e+01	0.0001	32.0	4.09%	790.0	1.72%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-1.117e+01	0.0001	48.0	6.13%	1447.2	3.15%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-1.088e+01	0.0001	70.0	8.94%	2433.7	5.30%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-4	-1.026e+01	0.0002	60.0	7.66%	2028.6	4.41%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-4	-9.983e+00	0.0003	8.0	1.02%	73.8	0.16%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-9.904e+00	0.0003	13.0	1.66%	198.2	0.43%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-4	-9.544e+00	0.0005	11.0	1.40%	150.4	0.33%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-9.303e+00	0.0006	15.0	1.92%	271.2	0.59%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-3	-9.123e+00	0.0007	64.0	8.17%	2299.7	5.00%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-9.106e+00	0.0007	16.0	2.04%	308.4	0.67%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-3	-8.667e+00	0.0011	59.0	7.54%	2106.2	4.58%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-3	-8.580e+00	0.0012	115.0	14.69%	4842.8	10.54%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-8.456e+00	0.0013	48.0	6.13%	1623.1	3.53%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-3	-8.263e+00	0.0015	33.0	4.21%	986.3	2.15%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-8.200e+00	0.0016	8.0	1.02%	95.9	0.21%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-3	-8.087e+00	0.0018	15.0	1.92%	304.5	0.66%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.922e+00	0.0021	17.0	2.17%	378.2	0.82%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-3	-7.598e+00	0.0028	118.0	15.07%	5126.0	11.15%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.542e+00	0.0029	37.0	4.73%	1201.3	2.61%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-7.390e+00	0.0034	49.0	6.26%	1751.3	3.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-3	-7.121e+00	0.0043	65.0	8.30%	2532.0	5.51%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-7.076e+00	0.0045	78.0	9.96%	3171.2	6.90%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.664e+00	0.0066	55.0	7.02%	2097.3	4.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-6.623e+00	0.0068	33.0	4.21%	1088.2	2.37%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-2	-6.534e+00	0.0074	30.0	3.83%	963.3	2.10%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-6.479e+00	0.0077	55.0	7.02%	2115.9	4.60%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.366e+00	0.0085	16.0	2.04%	399.2	0.87%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.261e+00	0.0093	34.0	4.34%	1158.5	2.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-6.176e+00	0.0100	29.0	3.70%	943.8	2.05%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.029e+00	0.0114	41.0	5.24%	1496.4	3.26%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.016e+00	0.0114	20.0	2.55%	572.2	1.25%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.959e+00	0.0119	99.0	12.64%	4381.9	9.53%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-5.928e+00	0.0121	111.0	14.18%	5010.6	10.90%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.901e+00	0.0123	37.0	4.73%	1322.9	2.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-5.836e+00	0.0130	31.0	3.96%	1055.6	2.30%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.791e+00	0.0134	11.0	1.40%	238.2	0.52%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.630e+00	0.0155	8.0	1.02%	143.6	0.31%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-5.522e+00	0.0171	47.0	6.00%	1827.5	3.98%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-5.465e+00	0.0179	22.0	2.81%	686.1	1.49%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.327e+00	0.0203	76.0	9.71%	3291.2	7.16%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-5.297e+00	0.0207	24.0	3.07%	783.5	1.70%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-5.282e+00	0.0208	37.0	4.73%	1375.5	2.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.248e+00	0.0213	20.0	2.55%	614.2	1.34%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.222e+00	0.0216	53.0	6.77%	2151.8	4.68%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-4.942e+00	0.0283	13.0	1.66%	344.2	0.75%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-4.925e+00	0.0284	48.0	6.13%	1939.3	4.22%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-2	-4.921e+00	0.0284	6.0	0.77%	98.3	0.21%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-4.908e+00	0.0284	8.0	1.02%	162.4	0.35%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-4.827e+00	0.0304	63.0	8.05%	2699.2	5.87%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-4.698e+00	0.0342	78.0	9.96%	3486.1	7.59%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-4.690e+00	0.0342	12.0	1.53%	316.5	0.69%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-4.598e+00	0.0370	175.0	22.35%	8720.9	18.98%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-4.521e+00	0.0396	22.0	2.81%	748.1	1.63%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-4.519e+00	0.0396	34.0	4.34%	1304.6	2.84%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-4.477e+00	0.0406	48.0	6.13%	1991.5	4.33%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-4.467e+00	0.0406	46.0	5.87%	1893.5	4.12%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-4.415e+00	0.0423	11.0	1.40%	289.2	0.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.345e+00	0.0450	27.0	3.45%	990.4	2.15%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.295e+00	0.0468	8.0	1.02%	181.2	0.39%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.265e+00	0.0478	5.0	0.64%	82.8	0.18%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.229e+00	0.0491	19.0	2.43%	635.6	1.38%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.167e+00	0.0518	18.0	2.30%	595.1	1.29%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.159e+00	0.0518	7.0	0.89%	150.3	0.33%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.144e+00	0.0520	14.0	1.79%	424.9	0.92%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-4.113e+00	0.0532	198.0	25.29%	10120.1	22.02%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.063e+00	0.0554	41.0	5.24%	1693.8	3.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.004e+00	0.0583	34.0	4.34%	1356.8	2.95%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.994e+00	0.0583	5.0	0.64%	88.3	0.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.986e+00	0.0583	14.0	1.79%	433.6	0.94%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.982e+00	0.0583	13.0	1.66%	391.8	0.85%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.955e+00	0.0591	50.0	6.39%	2158.8	4.70%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.939e+00	0.0596	7.0	0.89%	157.2	0.34%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.908e+00	0.0609	23.0	2.94%	841.0	1.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.795e+00	0.0676	36.0	4.60%	1477.8	3.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.559e+00	0.0850	17.0	2.17%	593.4	1.29%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.482e+00	0.0910	14.0	1.79%	464.3	1.01%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.415e+00	0.0965	123.0	15.71%	6145.6	13.37%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.412e+00	0.0965	53.0	6.77%	2391.6	5.20%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.385e+00	0.0978	35.0	4.47%	1476.9	3.21%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.343e+00	0.1013	28.0	3.58%	1134.3	2.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.338e+00	0.1013	32.0	4.09%	1332.1	2.90%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.327e+00	0.1013	26.0	3.32%	1038.7	2.26%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.323e+00	0.1013	17.0	2.17%	611.9	1.33%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.283e+00	0.1043	155.0	19.80%	7949.8	17.30%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.256e+00	0.1063	22.0	2.81%	852.6	1.86%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.246e+00	0.1065	9.0	1.15%	263.6	0.57%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.127e+00	0.1191	65.0	8.30%	3070.8	6.68%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.110e+00	0.1202	9.0	1.15%	270.5	0.59%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.084e+00	0.1225	32.0	4.09%	1363.8	2.97%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-3.073e+00	0.1230	35.0	4.47%	1517.0	3.30%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.000e+00	0.1314	30.0	3.83%	1273.2	2.77%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.933e+00	0.1395	74.0	9.45%	3590.3	7.81%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-2.911e+00	0.1415	6.0	0.77%	158.0	0.34%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.841e+00	0.1506	30.0	3.83%	1293.1	2.81%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.828e+00	0.1516	4.0	0.51%	85.4	0.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.824e+00	0.1516	2.0	0.26%	23.3	0.05%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-2.806e+00	0.1528	7.0	0.89%	202.5	0.44%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.796e+00	0.1533	16.0	2.04%	608.6	1.32%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.783e+00	0.1542	11.0	1.40%	377.5	0.82%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.735e+00	0.1607	32.0	4.09%	1410.0	3.07%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-2.698e+00	0.1656	13.0	1.66%	475.9	1.04%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.640e+00	0.1743	11.0	1.40%	388.0	0.84%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.597e+00	0.1808	15.0	1.92%	578.6	1.26%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.590e+00	0.1808	31.0	3.96%	1378.9	3.00%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.544e+00	0.1880	11.0	1.40%	395.0	0.86%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.528e+00	0.1899	20.0	2.55%	829.5	1.80%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.527e+00	0.1899	38.0	4.85%	1751.4	3.81%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.526e+00	0.1899	43.0	5.49%	2014.4	4.38%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.511e+00	0.1899	4.0	0.51%	95.1	0.21%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.473e+00	0.1955	83.0	10.60%	4185.7	9.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.451e+00	0.1986	39.0	4.98%	1816.9	3.95%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.404e+00	0.2070	17.0	2.17%	694.9	1.51%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-2.387e+00	0.2091	64.0	8.17%	3168.8	6.90%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.375e+00	0.2102	83.0	10.60%	4210.9	9.16%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.331e+00	0.2184	37.0	4.73%	1731.2	3.77%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-2.329e+00	0.2184	159.0	20.31%	8473.5	18.44%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.228e+00	0.2391	12.0	1.53%	467.5	1.02%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.215e+00	0.2408	32.0	4.09%	1487.9	3.24%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.200e+00	0.2429	25.0	3.19%	1124.2	2.45%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.194e+00	0.2429	8.0	1.02%	281.8	0.61%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.194e+00	0.2429	8.0	1.02%	281.1	0.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.069e+00	0.2720	19.0	2.43%	833.3	1.81%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.062e+00	0.2723	29.0	3.70%	1354.9	2.95%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.054e+00	0.2728	31.0	3.96%	1461.6	3.18%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.049e+00	0.2728	30.0	3.83%	1409.7	3.07%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.009e+00	0.2821	13.0	1.66%	537.9	1.17%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.952e+00	0.2970	13.0	1.66%	543.5	1.18%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.943e+00	0.2979	6.0	0.77%	206.7	0.45%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.937e+00	0.2980	42.0	5.36%	2074.0	4.51%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.855e+00	0.3217	81.0	10.34%	4245.7	9.24%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.788e+00	0.3421	5.0	0.64%	170.9	0.37%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.772e+00	0.3458	4.0	0.51%	126.6	0.28%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.760e+00	0.3481	69.0	8.81%	3604.8	7.84%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.756e+00	0.3481	30.0	3.83%	1461.3	3.18%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.720e+00	0.3580	17.0	2.17%	776.4	1.69%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.678e+00	0.3714	4.0	0.51%	131.2	0.29%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.646e+00	0.3815	5.0	0.64%	179.2	0.39%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.641e+00	0.3815	10.0	1.28%	425.6	0.93%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.636e+00	0.3815	37.0	4.73%	1866.0	4.06%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.605e+00	0.3910	51.0	6.51%	2646.7	5.76%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.583e+00	0.3978	16.0	2.04%	744.0	1.62%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.550e+00	0.4088	1.0	0.13%	14.5	0.03%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.536e+00	0.4123	138.0	17.62%	7592.7	16.52%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.522e+00	0.4159	27.0	3.45%	1344.2	2.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.510e+00	0.4189	12.0	1.53%	543.0	1.18%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.480e+00	0.4293	15.0	1.92%	705.2	1.53%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.476e+00	0.4293	2.0	0.26%	53.9	0.12%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.458e+00	0.4344	42.0	5.36%	2185.2	4.75%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.443e+00	0.4388	28.0	3.58%	1415.5	3.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.424e+00	0.4449	13.0	1.66%	607.6	1.32%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.412e+00	0.4480	3.0	0.38%	100.0	0.22%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.358e+00	0.4706	3.0	0.38%	103.7	0.23%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.316e+00	0.4880	21.0	2.68%	1057.9	2.30%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.281e+00	0.5028	35.0	4.47%	1841.7	4.01%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.275e+00	0.5035	5.0	0.64%	207.8	0.45%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.226e+00	0.5264	40.0	5.11%	2138.0	4.65%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.224e+00	0.5264	68.0	8.68%	3725.1	8.11%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.218e+00	0.5264	5.0	0.64%	212.9	0.46%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.210e+00	0.5268	7.0	0.89%	317.6	0.69%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.197e+00	0.5311	88.0	11.24%	4879.9	10.62%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.187e+00	0.5342	6.0	0.77%	267.8	0.58%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.186e+00	0.5342	5.0	0.64%	215.2	0.47%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.182e+00	0.5342	4.0	0.51%	164.3	0.36%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.166e+00	0.5374	7.0	0.89%	322.7	0.70%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.157e+00	0.5374	4.0	0.51%	166.4	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.157e+00	0.5374	4.0	0.51%	166.4	0.36%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.154e+00	0.5374	68.0	8.68%	3752.9	8.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.149e+00	0.5374	3.0	0.38%	116.6	0.25%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.143e+00	0.5374	13.0	1.66%	651.0	1.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.129e+00	0.5426	16.0	2.04%	818.9	1.78%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.126e+00	0.5426	1.0	0.13%	23.6	0.05%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.125e+00	0.5426	10.0	1.28%	489.1	1.06%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.103e+00	0.5490	6.0	0.77%	276.0	0.60%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.092e+00	0.5524	3.0	0.38%	120.3	0.26%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.059e+00	0.5688	10.0	1.28%	499.4	1.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.043e+00	0.5753	4.0	0.51%	177.0	0.39%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.041e+00	0.5753	2.0	0.26%	73.3	0.16%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.026e+00	0.5800	19.0	2.43%	1007.1	2.19%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.981e-01	0.5936	5.0	0.64%	234.5	0.51%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.901e-01	0.5958	57.0	7.28%	3187.3	6.94%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.842e-01	0.5967	10.0	1.28%	511.2	1.11%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.787e-01	0.5973	50.0	6.39%	2789.1	6.07%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.761e-01	0.5973	16.0	2.04%	849.8	1.85%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.742e-01	0.5973	2.0	0.26%	77.0	0.17%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-9.580e-01	0.6020	77.0	9.83%	4355.8	9.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.556e-01	0.6020	78.0	9.96%	4414.2	9.61%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.381e-01	0.6088	11.0	1.40%	575.1	1.25%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-9.379e-01	0.6088	75.0	9.58%	4250.0	9.25%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.203e-01	0.6145	47.0	6.00%	2639.8	5.74%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.198e-01	0.6145	5.0	0.64%	243.6	0.53%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.957e-01	0.6245	46.0	5.87%	2592.0	5.64%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.952e-01	0.6245	11.0	1.40%	583.7	1.27%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.877e-01	0.6245	36.0	4.60%	2017.5	4.39%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.570e-01	0.6410	42.0	5.36%	2375.2	5.17%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.435e-01	0.6471	1.0	0.13%	33.3	0.07%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.425e-01	0.6471	2.0	0.26%	87.0	0.19%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.283e-01	0.6516	154.0	19.67%	8912.3	19.39%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-8.136e-01	0.6585	23.0	2.94%	1291.2	2.81%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.428e-01	0.7040	2.0	0.26%	94.7	0.21%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-7.356e-01	0.7062	3.0	0.38%	152.3	0.33%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.302e-01	0.7072	27.0	3.45%	1551.7	3.38%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.289e-01	0.7072	21.0	2.68%	1201.6	2.61%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.149e-01	0.7124	18.0	2.30%	1030.1	2.24%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.914e-01	0.7264	12.0	1.53%	685.7	1.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.863e-01	0.7272	13.0	1.66%	745.7	1.62%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.685e-01	0.7373	8.0	1.02%	455.0	0.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.637e-01	0.7379	8.0	1.02%	456.8	0.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.590e-01	0.7385	8.0	1.02%	457.4	1.00%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.564e-01	0.7385	14.0	1.79%	812.8	1.77%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.299e-01	0.7544	65.0	8.30%	3831.4	8.34%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.262e-01	0.7544	15.0	1.92%	881.0	1.92%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.206e-01	0.7556	11.0	1.40%	644.2	1.40%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-6.183e-01	0.7556	14.0	1.79%	823.7	1.79%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.151e-01	0.7556	55.0	7.02%	3250.2	7.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.779e-01	0.7795	4.0	0.51%	233.8	0.51%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.760e-01	0.7795	10.0	1.28%	596.4	1.30%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-5.715e-01	0.7795	28.0	3.58%	1673.9	3.64%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.611e-01	0.7838	5.0	0.64%	297.1	0.65%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.544e-01	0.7861	4.0	0.51%	237.3	0.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.535e-01	0.7861	25.0	3.19%	1502.3	3.27%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.392e-01	0.7921	2.0	0.26%	115.5	0.25%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.262e-01	0.7995	23.0	2.94%	1394.8	3.04%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.214e-01	0.8004	22.0	2.81%	1336.0	2.91%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.092e-01	0.8072	21.0	2.68%	1281.6	2.79%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.019e-01	0.8101	5.0	0.64%	310.0	0.67%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.001e-01	0.8101	103.0	13.15%	6174.6	13.44%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.928e-01	0.8116	17.0	2.17%	1046.1	2.28%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.864e-01	0.8138	15.0	1.92%	927.3	2.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.856e-01	0.8138	7.0	0.89%	437.1	0.95%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-4.842e-01	0.8138	33.0	4.21%	2015.9	4.39%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.718e-01	0.8169	24.0	3.07%	1479.9	3.22%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.702e-01	0.8169	5.0	0.64%	316.1	0.69%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.638e-01	0.8176	9.0	1.15%	567.9	1.24%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.600e-01	0.8177	10.0	1.28%	630.7	1.37%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.418e-01	0.8298	23.0	2.94%	1433.8	3.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.336e-01	0.8337	8.0	1.02%	514.1	1.12%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.310e-01	0.8337	18.0	2.30%	1133.1	2.47%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.295e-01	0.8337	16.0	2.04%	1011.8	2.20%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.273e-01	0.8337	4.0	0.51%	262.1	0.57%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.198e-01	0.8337	13.0	1.66%	830.5	1.81%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.120e-01	0.8371	3.0	0.38%	201.0	0.44%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.074e-01	0.8380	7.0	0.89%	459.7	1.00%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.977e-01	0.8433	7.0	0.89%	462.7	1.01%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.833e-01	0.8526	3.0	0.38%	206.2	0.45%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.804e-01	0.8526	28.0	3.58%	1772.4	3.86%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.664e-01	0.8612	21.0	2.68%	1350.6	2.94%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.654e-01	0.8612	23.0	2.94%	1474.9	3.21%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.594e-01	0.8614	75.0	9.58%	4635.4	10.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.466e-01	0.8695	2.0	0.26%	145.4	0.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.440e-01	0.8695	3.0	0.38%	215.5	0.47%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.370e-01	0.8720	24.0	3.07%	1553.7	3.38%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.304e-01	0.8749	38.0	4.85%	2419.1	5.26%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.298e-01	0.8749	7.0	0.89%	485.9	1.06%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.241e-01	0.8749	38.0	4.85%	2424.6	5.28%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.239e-01	0.8749	3.0	0.38%	220.3	0.48%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.168e-01	0.8752	13.0	1.66%	876.1	1.91%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.082e-01	0.8798	14.0	1.79%	945.0	2.06%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.071e-01	0.8798	15.0	1.92%	1008.4	2.19%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.956e-01	0.8852	2.0	0.26%	156.9	0.34%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.830e-01	0.8934	2.0	0.26%	159.2	0.35%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.782e-01	0.8948	1.0	0.13%	83.9	0.18%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.655e-01	0.9033	5.0	0.64%	376.0	0.82%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.599e-01	0.9055	4.0	0.51%	309.3	0.67%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.561e-01	0.9060	38.0	4.85%	2484.9	5.41%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.560e-01	0.9060	6.0	0.77%	448.5	0.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.544e-01	0.9060	3.0	0.38%	240.1	0.52%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.484e-01	0.9060	22.0	2.81%	1490.5	3.24%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.464e-01	0.9060	8.0	1.02%	587.9	1.28%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.314e-01	0.9140	2.0	0.26%	173.6	0.38%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.291e-01	0.9140	1.0	0.13%	93.4	0.20%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.141e-01	0.9241	5.0	0.64%	398.7	0.87%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.978e-01	0.9363	5.0	0.64%	406.9	0.89%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.876e-01	0.9429	25.0	3.19%	1736.8	3.78%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.875e-01	0.9429	31.0	3.96%	2118.1	4.61%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.686e-01	0.9551	5.0	0.64%	423.0	0.92%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.664e-01	0.9551	24.0	3.07%	1695.4	3.69%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.598e-01	0.9576	18.0	2.30%	1312.2	2.86%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.357e-01	0.9779	1.0	0.13%	121.4	0.26%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.328e-01	0.9779	17.0	2.17%	1276.9	2.78%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.306e-01	0.9779	47.0	6.00%	3213.4	6.99%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.239e-01	0.9804	1.0	0.13%	126.0	0.27%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.073e-01	0.9938	6.0	0.77%	541.1	1.18%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.050e-01	0.9938	49.0	6.26%	3392.9	7.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.756e-02	0.9975	15.0	1.92%	1188.2	2.59%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-9.706e-02	0.9975	16.0	2.04%	1257.4	2.74%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.450e-02	0.9975	1.0	0.13%	141.5	0.31%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-7.473e-02	1.0000	12.0	1.53%	1016.6	2.21%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.179e-02	1.0000	8.0	1.02%	732.6	1.59%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.475e-02	1.0000	5.0	0.64%	514.9	1.12%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.825e-02	1.0000	2.0	0.26%	270.0	0.59%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.358e-02	1.0000	7.0	0.89%	688.6	1.50%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.597e-02	1.0000	4.0	0.51%	463.0	1.01%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.532e-02	1.0000	11.0	1.40%	1006.9	2.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.878e-02	1.0000	39.0	4.98%	2955.2	6.43%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.252e-02	1.0000	42.0	5.36%	3187.9	6.94%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.953e-02	1.0000	1.0	0.13%	231.6	0.50%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.253e-02	1.0000	38.0	4.85%	3087.4	6.72%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.534e-03	1.0000	1.0	0.13%	279.2	0.61%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.922e-03	1.0000	2.0	0.26%	413.4	0.90%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.229e-03	1.0000	9.0	1.15%	1213.0	2.64%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.460e-04	1.0000	11.0	1.40%	1409.1	3.07%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.940e-04	1.0000	15.0	1.92%	1828.6	3.98%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.230e-04	1.0000	6.0	0.77%	1048.5	2.28%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	26.6	0.06%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	101.9	0.22%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	43.0	0.09%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	27.5	0.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	109.3	0.24%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	47.7	0.10%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	37.1	0.08%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	45.7	0.10%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	34.2	0.07%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.4	0.06%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	22.5	0.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.1	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	18.5	0.04%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	6.2	0.01%