Information for 1-GGCTAATTAG (Motif 2)

T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G
Reverse Opposite:
A G T C G C A T T G C A G T C A C A G T C A G T T G C A T A C G A T G C A G T C
p-value:1e-31
log p-value:-7.260e+01
Information Content per bp:1.547
Number of Target Sequences with motif218.0
Percentage of Target Sequences with motif27.84%
Number of Background Sequences with motif5584.9
Percentage of Background Sequences with motif12.15%
Average Position of motif in Targets50.8 +/- 23.8bp
Average Position of motif in Background50.3 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0131.1_Pax4/Jaspar

Match Rank:1
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTAG----
NNGNGCTAATTAGNTNA
 A C G T A C G T A C G T T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

LHX2/MA0700.1/Jaspar

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GGCTAATTAG-
-NNTAATTAGN
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T
A C G T T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T

LHX6/MA0658.1/Jaspar

Match Rank:3
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GGCTAATTAG-
-NCTAATTAGT
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T
A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

NOTO/MA0710.1/Jaspar

Match Rank:4
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GGCTAATTAG-
-NNTAATTAGN
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T
A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

EMX2/MA0886.1/Jaspar

Match Rank:5
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GGCTAATTAG-
-GCTAATTAGC
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T
A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTAG----
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GGCTAATTAG
--NTAATTAG
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G
A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GGCTAATTAG----
CACCGCTAATTAGCGGT
 A C G T A C G T A C G T T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:GGCTAATTAG
--CTAATTAG
 T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G
A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G

PH0034.1_Gbx2/Jaspar

Match Rank:10
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---GGCTAATTAG----
AANCGCTAATTAGCNNN
 A C G T A C G T A C G T T C A G T A C G A T G C A C G T G T C A G T C A C A G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T