Information for 12-GCATTAGCAG (Motif 16)

A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G
Reverse Opposite:
A T G C C A G T A C T G A G T C C G A T C G T A G T C A A C G T C T A G A T G C
p-value:1e-12
log p-value:-2.958e+01
Information Content per bp:1.845
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif124.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets50.7 +/- 21.3bp
Average Position of motif in Background52.3 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCATTAGCAG
NNGGATTAGN--
 A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCATTAGCAG
GGATTAGC--
 A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCATTAGCAG--
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCATTAGCAG-
CTCATTTGCATW
 A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCATTAGCAG-
BTVATTWGCATA
 A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCATTAGCAG--
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCATTAGCAG-
--ATTTGCATA
 A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCATTAGCAG
GNGGATTAGN--
 A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCATTAGCAG--
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCATTAGCAG----
TNTAATTTGCATACNA
 A C G T A C G T A T C G A G T C G T C A C A G T C G A T C G T A A C T G A G T C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A