Information for 10-CCAGCCTGCTAAG (Motif 20)

A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A C T A G G T A C C G T A A C T G A C T G A G T C A C G T A C T G A C T G
p-value:1e-8
log p-value:-1.919e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 13.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCAGCCTGCTAAG
-CCCCCTGCTGTG
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCAGCCTGCTAAG-
----CCTGCTGAGH
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAGCCTGCTAAG-----
-TAAACTGATAAGAAGAT
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAGCCTGCTAAG
-CAGCC-------
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCTGCTAAG
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGCCTGCTAAG
BCAGACWA-----
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCTGCTAAG
ATTTCCCAGVAKSCY---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAGCCTGCTAAG---
-TNTCCTGCTGTGNNG
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------CCAGCCTGCTAAG
ACTATGCCAACCTACC---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAGCCTGCTAAG---
-NNTCCTGCTGTGNNN
 A G T C A G T C C G T A A C T G A G T C G T A C A C G T A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C