Information for 3-TGCGAGGCTGGAG (Motif 4)

A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C C G T A A C T G G T A C A G T C G C A T A T G C A C T G A G T C C T G A
p-value:1e-14
log p-value:-3.275e+01
Information Content per bp:1.885
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 22.5bp
Average Position of motif in Background30.1 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGCGAGGCTGGAG--
---GRTGMTRGAGCC
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGCGAGGCTGGAG
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGCGAGGCTGGAG
---TWGTCTGV--
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TGCGAGGCTGGAG--
----GGGCGGGAAGG
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

E2F4/MA0470.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGCGAGGCTGGAG--
----GGGCGGGAAGG
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCGAGGCTGGAG
GGGGCTYGKCTGGGA
 A C G T A C G T A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGCGAGGCTGGAG
-VBSYGTCTGG--
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGCGAGGCTGGAG
---CTGTCTGG--
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

EGR3/MA0732.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGCGAGGCTGGAG
ANTGCGTGGGCGTNN
 A C G T A C G T A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G
C G T A C T A G G A C T C T A G A G T C T A C G A C G T T C A G C T A G A T C G G A T C C T A G C A G T C T G A C T A G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGCGAGGCTGGAG--
-----GGCGGGAARN
 A G C T A C T G A G T C T A C G C G T A A C T G A C T G A G T C A C G T A C T G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G