Information for 16-MMCCAGNCACAKT (Motif 29)

G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
Reverse Opposite:
C G T A G T A C C G A T A C T G C G A T C T A G C A G T T A G C C G A T C T A G C T A G C A T G C A T G
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.607
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif6.29%
Number of Background Sequences with motif1082.0
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets51.5 +/- 23.8bp
Average Position of motif in Background50.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:MMCCAGNCACAKT
--BCAGACWA---
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:MMCCAGNCACAKT
--CCAGACAG---
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:MMCCAGNCACAKT
--CCAGGAACAG-
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---MMCCAGNCACAKT-
CAAATCCAGACATCACA
 A C G T A C G T A C G T G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-MMCCAGNCACAKT
TGCCCAGNHW----
 A C G T G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:MMCCAGNCACAKT
--CCAGACRSVB-
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:MMCCAGNCACAKT
SCCTAGCAACAG-
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:MMCCAGNCACAKT---------
--YCAGGCWCAGTACCAGGCTC
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-MMCCAGNCACAKT
ATGCCAGACN----
 A C G T G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:MMCCAGNCACAKT-
---AAACCACAGAN
 G T A C G T A C A G T C G A T C C G T A A T C G G T C A A G T C C G T A G T A C C G T A C A T G G C A T A C G T
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C