Information for 4-GCTCGCAGAGGCG (Motif 5)

A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
Reverse Opposite:
A G T C A T C G A G T C A G T C A C G T A G T C A C G T A C T G G T A C A T C G G T C A A C T G A G T C
p-value:1e-10
log p-value:-2.472e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.7 +/- 27.0bp
Average Position of motif in Background62.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTCGCAGAGGCG
---CGCAGCTGCG
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCTCGCAGAGGCG-
----CCAGACRSVB
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GCTCGCAGAGGCG----
--NCGCAGCGGGGGGTC
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCTCGCAGAGGCG
-NNVVCAGCTGBN
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCTCGCAGAGGCG-------
-----CAAAGGCGTGGCCAG
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCTCGCAGAGGCG
NGCTN---------
 A C G T A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GCTCGCAGAGGCG
GCCGCGCAGTGCGT
 A C G T A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

NRF1/MA0506.1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GCTCGCAGAGGCG-
---TGCGCAGGCGC
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G A C G T
A C G T A C G T A C G T A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GCTCGCAGAGGCG
TBGCACGCAA-----
 A C G T A C G T A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GCTCGCAGAGGCG----
---CACAGCGGGGGGTC
 A C T G A G T C A C G T A T G C A C T G A G T C C G T A A C T G C G T A C T A G A C T G A T G C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C