Information for 3-TGGCGAGTTCCCA (Motif 4)

A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
Reverse Opposite:
A C G T A C T G A T C G A T C G C T G A C T G A A G T C A C G T A T G C A C T G A G T C G T A C C G T A
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.841
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.2 +/- 21.1bp
Average Position of motif in Background39.7 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGGCGAGTTCCCA
TTGGCATGGTGCCA
 A C G T A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCGAGTTCCCA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGGCGAGTTCCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGGCGAGTTCCCA
GTTCTCGCGAGANCC--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
T A C G G A C T G A C T T G A C A G C T A G T C C A T G G T A C A C T G T C G A A C T G T C G A A C G T A G T C A T G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGCGAGTTCCCA
NGGGGATTTCCC-
 A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGCGAGTTCCCA
GGGGGAATCCCC-
 A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TGGCGAGTTCCCA--
-----HTTTCCCASG
 A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFKB2/MA0778.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGCGAGTTCCCA
AGGGGAATCCCCT
 A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGCGAGTTCCCA
AGGGGATTCCCCT
 A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TGGCGAGTTCCCA
TTGACCGAGAATTCC--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C A T C G C G T A A C T G A G C T A G C T A T G C A T G C A G T C G T C A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T