Information for 7-CTCGCACACAAAGTTT (Motif 20)

A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
Reverse Opposite:
G T C A C G T A C G T A A T G C A C G T C G A T C G A T A C T G A C G T A C T G A C G T A C T G T A G C C T A G C G T A A T C G
p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.895
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 30.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCGCACACAAAGTTT
CGAAGCACACAAAATA-
A C G T A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCGCACACAAAGTTT-
--CTCACACAATGGCGC
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTCGCACACAAAGTTT
ATTTGCATACAATGG--
A C G T A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCGCACACAAAGTTT
-TBGCACGCAA-----
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCGCACACAAAGTTT
CRCCCACGCA------
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTCGCACACAAAGTTT
-------ACAAAG---
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTCGCACACAAAGTTT-
-AAACAGACAAAGGAAT
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CTCGCACACAAAGTTT
----AAAACAAAGG--
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CTCGCACACAAAGTTT--
---GAACADWATGTTCTT
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CTCGCACACAAAGTTT
----VRRACAAWGG--
A T G C A C G T A G T C A T C G A G T C C G T A A G T C C G T A G T A C C G T A C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T