Information for 1-TTYTTTGTTCTTKCTT (Motif 2)

C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
Reverse Opposite:
T G C A C T G A A C T G G T A C T C G A C T G A A C T G G T C A C T G A T G A C C G T A T G C A G C T A C T A G C T G A G C T A
p-value:1e-13
log p-value:-3.005e+01
Information Content per bp:1.702
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 31.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTYTTTGTTCTTKCTT
NNNTCCTTTGTTCTNNN--
 A C G T A C G T A C G T C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTYTTTGTTCTTKCTT
TNNTCCTTTGTTCTNNT--
 A C G T A C G T A C G T C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTYTTTGTTCTTKCTT
-YCTTTGTTCC-----
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTYTTTGTTCTTKCTT
-CCTTTGTTTT-----
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TTYTTTGTTCTTKCTT
-CCWTTGTYYB-----
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTYTTTGTTCTTKCTT
NCNTTTGTTATTTNN-
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTYTTTGTTCTTKCTT
-CCATTGTTTT-----
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTYTTTGTTCTTKCTT
-CCTTTGATCTTT---
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTYTTTGTTCTTKCTT
-CCWTTGTY-------
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TTYTTTGTTCTTKCTT
----CTGTTCCTGG--
 C G A T A G C T A G T C C G A T A C G T A C G T A C T G A G C T A C G T T G A C A G C T A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T