Information for 3-TGCGGATCAG (Motif 17)

G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G T C G A A C G T A T G C G T A C A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.931e+01
Information Content per bp:1.849
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif71.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets53.1 +/- 27.9bp
Average Position of motif in Background52.8 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGCGGATCAG
--NGGATTAN
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGCGGATCAG---
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCGGATCAG-
-GNGGATTAGN
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGCGGATCAG
--CGGAGC--
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCGGATCAG-
-NNGGATTAGN
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGCGGATCAG-
---GGATTAGC
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGCGGATCAG--
--TGGAACAGMA
 G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T A C G T
A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCGGATCAG-----
NNAAGGGATTAACGANT
 A C G T A C G T G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCGGATCAG
AAGAGGATTAG
 A C G T G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGCGGATCAG----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T G C A T A C T G A G T C A C T G A T C G G T C A A G C T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A