Information for 6-YGGCTTTTTGCCC (Motif 15)

A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
Reverse Opposite:
T A C G A C T G A C T G A G T C G T C A G C T A C G T A C G T A G T C A A C T G A G T C G T A C C T A G
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.834
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets44.6 +/- 25.5bp
Average Position of motif in Background61.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YGGCTTTTTGCCC-
CTTGGCANNNTGCCAA
 A C G T A C G T A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YGGCTTTTTGCCC
TTGGCATGGTGCCA
 A C G T A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YGGCTTTTTGCCC
CTGGCAGNCTGCCA
 A C G T A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:YGGCTTTTTGCCC---
-------ATGCCCACC
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:YGGCTTTTTGCCC
--YCTTTGTTCC-
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:YGGCTTTTTGCCC---
-------CTGCCCGCA
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:YGGCTTTTTGCCC------
---GGGTGTGCCCAAAAGG
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YGGCTTTTTGCCC----
--WCATTTTGKCCTCYT
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YGGCTTTTTGCCC
-NGCTN-------
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:YGGCTTTTTGCCC
-TGATTTATGGCC
 A G T C A C T G A C T G G T A C A C G T A C G T G C A T C A G T A C G T C T A G G T A C A G T C A T G C
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C