Information for 1-TCTCGTAGAA (Motif 3)

A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T C G T A A G T C A C T G C G T A A T C G T G C A
p-value:1e-12
log p-value:-2.811e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.6 +/- 28.1bp
Average Position of motif in Background44.2 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TCTCGTAGAA-
GCTCGTAAAAA
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TCTCGTAGAA---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TCTCGTAGAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCTCGTAGAA-
GGTCGTAAAAA
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCTCGTAGAA-
-GTCGTAAAAA
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCTCGTAGAA-
AGTCGTAAAAA
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCTCGTAGAA-
NTTTCTNAGAAA
 A C G T A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTCGTAGAA-
GGTCGTAAAAT
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCTCGTAGAA--
GGTCGTAAAATT
 A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCTCGTAGAA----
TCTTTCGAGGAATTTG
 A C G T A C G T A C G T A T G C A C G T A G T C A C T G G A C T G T C A A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G