Information for 6-GGAGACGTGC (Motif 13)

C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
Reverse Opposite:
C T A G A G T C T C G A G T A C A C T G C G A T A G T C A G C T A G T C A G T C
p-value:1e-9
log p-value:-2.119e+01
Information Content per bp:1.829
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif106.7
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets53.7 +/- 27.7bp
Average Position of motif in Background49.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGAGACGTGC
--RTACGTGC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGAGACGTGC
GGGTACGTGC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GGAGACGTGC
--GGACGTGC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

HEY2/MA0649.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GGAGACGTGC-
-GACACGTGCC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C A C G T
A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

Hes2/MA0616.1/Jaspar

Match Rank:5
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGAGACGTGC
TAACGACACGTGC
 A C G T A C G T A C G T C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GGAGACGTGC-
---TACGTGCV
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

Npas2/MA0626.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGAGACGTGC-
-NACACGTGCN
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C A C G T
A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

HEY1/MA0823.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GGAGACGTGC-
-GACACGTGCC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C A C G T
A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

Mlxip/MA0622.1/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GGAGACGTGC
--ACACGTGC
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGAGACGTGC
-GHCACGTG-
 C T A G C T A G T C G A T C A G C G T A A G T C A C T G A G C T A C T G A G T C
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T