Information for 9-GAGGAGAGAA (Motif 17)

A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C A C G T A G T C A C G T A G T C A G T C A C G T A G T C
p-value:1e-2
log p-value:-6.682e+00
Information Content per bp:1.965
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif57.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets38.0 +/- 10.1bp
Average Position of motif in Background42.9 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGGAGAGAA---
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGGAGAGAA-
-AGGTGTGAAA
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

TBX21/MA0690.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGGAGAGAA
AAGGTGTGAA
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGGAGAGAA-
-AGGTGTTAAT
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

EOMES/MA0800.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GAGGAGAGAA---
AAGGTGTGAAAAT
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T A C G T A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGGAGAGAA----
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX15/MA0803.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGAGAGAA
-AGGTGTGA-
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGAGAGAA-
-AGGTGTGAAM
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGGAGAGAA-
TAGGTGTGAAG
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A A C G T
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGGAGAGAA
-AGGTGTGA-
 A C T G C G T A A C T G A C T G C G T A A C T G C G T A A C T G C G T A G T C A
A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T