Information for 5-GGAGCGCCTCGAC (Motif 9)

A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
Reverse Opposite:
A C T G C G A T A G T C A C T G C T G A A C T G A C T G A G T C A C T G A G T C A C G T A G T C G T A C
p-value:1e-10
log p-value:-2.428e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.4 +/- 18.8bp
Average Position of motif in Background32.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAGCGCCTCGAC
TTGGGGGCGCCCCTAG
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCTCGAC
CGGAGC--------
 A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCGAC
NTCGCGCGCCTTNNN
 A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCGAC
ANCGCGCGCCCTTNN
 A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGCGCCTCGAC
AGCGCGCC-----
 A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCGAC
CTTGAGTGGCT----
 A C G T A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGAGCGCCTCGAC
-CAGCC-------
 A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGAGCGCCTCGAC---
----GGCCCCGCCCCC
 A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GGAGCGCCTCGAC-
----CGTCTAGACA
 A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCTCGAC
TTGAGTGSTT----
 A C G T A C T G A C T G C G T A A C T G A G T C A C T G A G T C A G T C A G C T A G T C A C T G C G T A A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T