Information for 1-CTCCTGGTGC (Motif 3)

T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C
Reverse Opposite:
T C A G G T A C G T C A T G A C G A T C G C T A A C T G T A C G G T C A A C T G
p-value:1e-12
log p-value:-2.837e+01
Information Content per bp:1.683
Number of Target Sequences with motif168.0
Percentage of Target Sequences with motif17.28%
Number of Background Sequences with motif4669.6
Percentage of Background Sequences with motif9.80%
Average Position of motif in Targets49.0 +/- 26.8bp
Average Position of motif in Background49.9 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGC--
CCACCTGTTGCAT
 A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTCCTGGTGC--
ANCCACCTGTTGCNC
 A C G T A C G T A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGGTGC
ACATCCTGNT--
 A C G T A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGGTGC-----
ATCCACAGGTGCGAAAA
 A C G T A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTCCTGGTGC--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGC----
TNTCCTGCTGTGNNG
 A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

TCF4/MA0830.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCCTGGTGC-
-NNCAGGTGCG
 T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T
A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGC-
CCCCCTGCTGTG
 A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTGGTGC----
TCNCCTGCTGNGNNN
 A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCCTGGTGC
NNCACCTGNN--
 A C G T A C G T T G A C C A G T A T G C A G T C C G A T C T A G A C T G C A G T C A T G A G T C
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T