Information for 2-SCMTWGGSCYAGACWC (Motif 2)

A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G A C G T A G T C A C G T T C A G C T A G A T G C A T G C A G T C G C T A G T C A A C G T A C T G A T G C
p-value:1e-13
log p-value:-2.997e+01
Information Content per bp:1.823
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.3 +/- 23.2bp
Average Position of motif in Background33.3 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:SCMTWGGSCYAGACWC
--------CCAGACAG
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:SCMTWGGSCYAGACWC--
--------CCAGACRSVB
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:SCMTWGGSCYAGACWC
--------BCAGACWA
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:SCMTWGGSCYAGACWC
-----CGTCTAGACA-
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:SCMTWGGSCYAGACWC----
---CAAATCCAGACATCACA
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:SCMTWGGSCYAGACWC
---AGGTGHCAGACA-
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SCMTWGGSCYAGACWC
----AGGCCTAG----
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:SCMTWGGSCYAGACWC
---AGGTGNCAGACAG
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:SCMTWGGSCYAGACWC-------
------TACGAGACTCCTCTAAC
 A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----SCMTWGGSCYAGACWC
YCAGGCWCAGTACCAGGCTC
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A A C G T C G A T A C T G A T C G A T C G A G T C A G T C G T C A A C T G C G T A A G T C C G T A A G T C
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C