Motif 4

Information for 3-CCCTTCCGACAGA (Motif 4)

Reverse Opposite:

p-value:	1e-11
log p-value:	-2.617e+01
Information Content per bp:	1.879
Number of Target Sequences with motif	6.0
Percentage of Target Sequences with motif	0.64%
Number of Background Sequences with motif	2.1
Percentage of Background Sequences with motif	0.00%
Average Position of motif in Targets	51.2 +/- 22.3bp
Average Position of motif in Background	49.3 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)	0.0
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:	1
Score:	0.60
Offset:	5
Orientation:	forward strand
Alignment:	CCCTTCCGACAGA -----TTGACAG-

MEIS2/MA0774.1/Jaspar

Match Rank:	2
Score:	0.57
Offset:	5
Orientation:	forward strand
Alignment:	CCCTTCCGACAGA -----TTGACAGC

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:	3
Score:	0.56
Offset:	4
Orientation:	reverse strand
Alignment:	CCCTTCCGACAGA ----RHTGWCAR-

INSM1/MA0155.1/Jaspar

Match Rank:	4
Score:	0.55
Offset:	-1
Orientation:	reverse strand
Alignment:	-CCCTTCCGACAGA CGCCCCCTGACA--

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:	5
Score:	0.55
Offset:	0
Orientation:	forward strand
Alignment:	CCCTTCCGACAGA CCCCTCCCCCAC-

POL009.1_DCE_S_II/Jaspar

Match Rank:	6
Score:	0.54
Offset:	7
Orientation:	reverse strand
Alignment:	CCCTTCCGACAGA -------CACAGN

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:	7
Score:	0.54
Offset:	-1
Orientation:	forward strand
Alignment:	-CCCTTCCGACAGA TGCCCCCGGGCA--

MEIS3/MA0775.1/Jaspar

Match Rank:	8
Score:	0.54
Offset:	5
Orientation:	forward strand
Alignment:	CCCTTCCGACAGA -----TTGACAGG

ELK4/MA0076.2/Jaspar

Match Rank:	9
Score:	0.54
Offset:	-1
Orientation:	forward strand
Alignment:	-CCCTTCCGACAGA CCACTTCCGGC---

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:	10
Score:	0.54
Offset:	0
Orientation:	forward strand
Alignment:	CCCTTCCGACAGA HACTTCCGGY---