Information for 3-CGCTGCAGCTGCTTCA (Motif 18)

A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G G T C A C G T A A C T G G A T C C G T A A C T G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G
p-value:1e-8
log p-value:-1.900e+01
Information Content per bp:1.904
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 27.0bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCTGCAGCTGCTTCA-
CTCAGCAGCTGCTACTG
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGCTGCAGCTGCTTCA
---AGCAGCTGCT---
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGCTGCAGCTGCTTCA
-NNAGCAGCTGCT---
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGCTGCAGCTGCTTCA
---CGCAGCTGCG---
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGCTGCAGCTGCTTCA
--NNGCAGCTGTC---
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CGCTGCAGCTGCTTCA
----NCAGCTGCTG--
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGCTGCAGCTGCTTCA
--NNGCAGCTGTT---
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGCTGCAGCTGCTTCA
---TGCAGCTGTCCCT
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CGCTGCAGCTGCTTCA
----GCAGCTGTNN--
 A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCTGCAGCTGCTTCA
ADGGYAGYAGCATCT---
 A C G T A C G T A G T C A C T G A G T C C G A T A C T G A G T C C G T A C T A G A G T C A C G T C A T G A G T C A C G T A C G T A G T C C G T A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T