Information for 2-GCSRMSCMTCCCTGCC (Motif 11)

A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C G T A C T G A T G C A C G T G A C T A T G C A T C G A G T C
p-value:1e-8
log p-value:-2.025e+01
Information Content per bp:1.862
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.9 +/- 24.7bp
Average Position of motif in Background48.5 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCSRMSCMTCCCTGCC
GTCATGCHTGRCTGS-
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:2
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCSRMSCMTCCCTGCC-----
-----CTATCCCCGCCCTATT
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCSRMSCMTCCCTGCC
-----RCATTCCWGG-
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GCSRMSCMTCCCTGCC-------
--------TCCCAGMCRAGCCCC
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCSRMSCMTCCCTGCC
NGTCACGCTTGGCTGC-
 A C G T A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCSRMSCMTCCCTGCC
-----NCTTCCCGCCC
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCSRMSCMTCCCTGCC---
GTCACGCTTGGCTGCNCNN
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCSRMSCMTCCCTGCC------
-----TACGCCCCGCCACTCTG
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCSRMSCMTCCCTGCC
--KGCCCTTCCCCA--
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C
A C G T A C G T C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.51
Offset:11
Orientation:forward strand
Alignment:GCSRMSCMTCCCTGCC----
-----------CTGCCCGCA
 A C T G A T G C A T C G C T A G T G C A T A C G A G T C G T C A A C G T A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A