Information for 3-CGCATCGCTG (Motif 10)

A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G
Reverse Opposite:
G T A C C G T A A C T G T G A C A T C G C G T A G A C T A C T G A T G C A T C G
p-value:1e-9
log p-value:-2.160e+01
Information Content per bp:1.778
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif212.7
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets44.9 +/- 24.3bp
Average Position of motif in Background52.1 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGCATCGCTG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CGCATCGCTG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGCATCGCTG-----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CGCATCGCTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CGCATCGCTG
-----NGCTN
 A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CGCATCGCTG--
------GCTGTG
 A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGCATCGCTG
TTCACGCATGAGTT
 A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGCATCGCTG--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGCATCGCTG-
-AAATCACTGC
 A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G A C G T
A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGCATCGCTG
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A C G T A T G C A T C G G T A C C T G A A C G T A T G C A C T G A G T C A C G T A C T G
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C