Information for 9-TGTVACTAATTAA (Motif 7)

A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A C G T A A C G T A G C T C T G A A T C G A C G T A G T C C G T A A T G C C G T A
p-value:1e-16
log p-value:-3.687e+01
Information Content per bp:1.846
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.1 +/- 21.9bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:TGTVACTAATTAA-----
--TGATTAATTAATTGAC
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C

PH0070.1_Hoxc5/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGTVACTAATTAA----
NNTNATTAATTAATTCG
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G T A C T A G A C G T C G T A C T G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T C A G T A T G C A T C G

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:TGTVACTAATTAA--
----NCTAATTAANN
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGTVACTAATTAA-----
-GTAACTAATTAACTACT
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0106.1_Msx1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGTVACTAATTAA---
TGCAACTAATTAATTC
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.75
Offset:5
Orientation:forward strand
Alignment:TGTVACTAATTAA
-----GTAATTAA
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A

GSX2/MA0893.1/Jaspar

Match Rank:7
Score:0.75
Offset:4
Orientation:forward strand
Alignment:TGTVACTAATTAA-
----ACTAATTAAA
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGTVACTAATTAA-----
-CNNANTAATTAATTNNC
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGTVACTAATTAA---
GTGCACTAATTAAGAC
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.74
Offset:4
Orientation:forward strand
Alignment:TGTVACTAATTAA-
----ACTAATTAAC
 A C G T A T C G C G A T T A C G C G T A A T G C A G C T C T G A C G T A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C