Information for 12-CTGGCTGGAG (Motif 13)

A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
Reverse Opposite:
A T G C C A G T A G T C A G T C G T C A C T A G A G T C G T A C C G T A C T A G
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.838
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.61%
Number of Background Sequences with motif232.8
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets55.6 +/- 23.2bp
Average Position of motif in Background49.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGAG
CTGTCTGG--
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCTGGAG---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGAG
TWGTCTGV--
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGGCTGGAG--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGGCTGGAG-----
CTGATTGGTCNATTT
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGAG
CWGGCGGGAA
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGGCTGGAG--
-GGGCGGGAAGG
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G A C G T A C G T
A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGGCTGGAG---
-TGTCAGGGGGCG
 A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G A C G T A C G T A C G T
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGGCTGGAG
VBSYGTCTGG--
 A C G T A C G T A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTGGCTGGAG
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C A C G T A C T G C T A G G A T C A C G T A C T G A C T G G T C A A T C G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T