Information for 18-CAGTTGGGAGACA (Motif 18)

A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
Reverse Opposite:
A C G T A C T G A G C T A G T C A C G T A G T C A T G C A T G C C G T A C G T A A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 23.9bp
Average Position of motif in Background53.1 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGTTGGGAGACA-
-AGGTGNCAGACAG
 A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0150.1_Mybl1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CAGTTGGGAGACA
CACGGCAGTTGGTNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGTTGGGAGACA
-AGGTGHCAGACA
 A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAGTTGGGAGACA
TGGCAGTTGG------
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CAGTTGGGAGACA
NNNTGGCAGTTGGTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGTTGGGAGACA
TGGCAGTTGN------
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGTTGGGAGACA---------
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGTTGGGAGACA
AACAGATGGC-----
 A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGTTGGGAGACA------
VCAKCTGGNNNCCAGMTGBN
 A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAGTTGGGAGACA
BRRCVGTTDN------
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A C G T A T C G A T C G A C T G C G T A A C T G C T G A A G T C G T C A
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T