Information for 11-CMTWTGSYAAGTT (Motif 12)

A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A G T A C A C G T A C G T C T G A A T C G A T G C C G T A C G T A C T G A A C T G C T A G
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.7 +/- 25.7bp
Average Position of motif in Background48.6 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
--GGTGCCAAGT-
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
---TTGCCAAG--
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
-TTATGCAAATTA
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
ATTATGCTAATTT
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CMTWTGSYAAGTT-
--TATGCWAATBAV
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
-TTATGCAAATTA
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CMTWTGSYAAGTT
--TATGCAAAT--
 A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CMTWTGSYAAGTT
ANCATATGGT-----
 A C G T A C G T A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CMTWTGSYAAGTT
ANCATATGTT-----
 A C G T A C G T A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CMTWTGSYAAGTT
ACCATATGGC-----
 A C G T A C G T A G T C G T A C A G C T C G A T A C G T A T C G A T G C A G C T C G T A C G T A A C T G A C G T A C G T
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T A C G T