Information for 5-ATGAATATCAGAG (Motif 7)

C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C T G C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGAATATCAGAG
ATGMATATDC---
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------ATGAATATCAGAG
NNTNTCATGAATGT-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGAATATCAGAG
ATGAATATTC---
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATGAATATCAGAG-
--AAAGATCAAAGG
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T
A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATGAATATCAGAG----
--AAAGATCAAAGGGTT
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATGAATATCAGAG---
--AAAGATCAAAGGAA
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATGAATATCAGAG-
----ACATCAAAGG
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0105.1_Arid3a_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGAATATCAGAG--
ACCCGTATCAAATTT
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAATATCAGAG
NTTNTATGAATGTGNNC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATGAATATCAGAG
NNAGATNVNWATCTN--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A G T C C G T A A C T G C G T A A C T G
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G A C G T A C G T