Information for 11-AGTCAAATTAATTCTA (Motif 17)

C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C T G C G T A A G T C A C G T
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3/MA0135.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGTCAAATTAATTCTA-
----AAATTAATTAATC
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGTCAAATTAATTCTA
----ATATTAATTAA-
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTCAAATTAATTCTA
GAAGACCAATTAGCGCT-
 A C G T A C G T C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTCAAATTAATTCTA--
-GATTAATTAATTAAGTC
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A A C G T A C G T
A C G T C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0149.1_Pou3f4/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTCAAATTAATTCTA--
-AATTAATTAATTAATTC
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A A C G T A C G T
A C G T C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0147.1_Pou3f2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGTCAAATTAATTCTA
NNNACTAATTAATTANC
 A C G T C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AGTCAAATTAATTCTA
-----AATTATT----
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTCAAATTAATTCTA
--NCTAATTAANN---
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A
A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTCAAATTAATTCTA----
---CGAATTAATTAAATACT
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0038.1_Hlx/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTCAAATTAATTCTA-
--TGTAATTAATTATGG
 C G T A A C T G A C G T A G T C C G T A C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A G T C A C G T C G T A A C G T
A C G T A C G T C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G