Information for 8-TTTATAACTTGCA (Motif 27)

A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A C G T A A C T G A C G T A C G T C G T A A C G T C G T A C G T A C G T A
p-value:1e-3
log p-value:-8.725e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTATAACTTGCA
TTTTATGGCTN---
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAACTTGCA
NTTTTATGAC-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTATAACTTGCA
DGWTTTATGRCN----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAACTTGCA
NTTTTATTACN----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTATAACTTGCA
TTTTATTGC-----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.58
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAACTTGCA
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.58
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAACTTGCA
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTTATAACTTGCA
NAATTTTATTACCNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTATAACTTGCA---
TTTATTAATTGCNNGN
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATAACTTGCA
NGANTTTTATGGCTCN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A G T C A C G T A C G T A C T G A G T C C G T A
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T