Information for 1-CTATAGWGTS (Motif 17)

A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G
Reverse Opposite:
A T G C C G T A G T A C C G A T A G T C A C G T C G T A A C G T C G T A C T A G
p-value:1e-5
log p-value:-1.227e+01
Information Content per bp:1.832
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif206.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets57.7 +/- 23.7bp
Average Position of motif in Background48.9 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTATAGWGTS-----
GTATAAAAGGCGGGG
 A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTATAGWGTS-----
GTATAAAAGGCGGGG
 A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTATAGWGTS-
NCGTATTATAATCNTA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTATAGWGTS-
TATAATTATAATATTC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTATAGWGTS
CCTTTTATAGNC
 A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTATAGWGTS---
---TTRAGTGSYK
 A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CTATAGWGTS-
NANTTATATATAANGN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTATAGWGTS
GCAATAAAA--
 A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTATAGWGTS--
YDGHTACAWTGTADC
 A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G A C G T A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTATAGWGTS
AAGCCATAAAA--
 A C G T A C G T A C G T A G T C A C G T C G T A A C G T C G T A C T A G C G T A A C T G C G A T A T C G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T