Information for 5-CGGAGCCACGGAG (Motif 9)

A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C A T C G A C G T A T C G A C T G A G T C A C G T A G T C A G T C A C T G
p-value:1e-9
log p-value:-2.092e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.4 +/- 27.5bp
Average Position of motif in Background23.1 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGAGCCACGGAG
CGGAGC-------
 A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGGAGCCACGGAG
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGGAGCCACGGAG
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------CGGAGCCACGGAG----
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGGAGCCACGGAG
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGGAGCCACGGAG--
-GTTGCCATGGNAAC
 A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CGGAGCCACGGAG
TACCATAGCAACGGT-
 A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CGGAGCCACGGAG
GGGGGCGGGGCC------
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CGGAGCCACGGAG
RGKGGGCGGAGC-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CGGAGCCACGGAG
--CAGCC------
 A G T C A C T G A C T G T C G A A C T G A G T C A T G C G T C A A T G C C T A G A C T G C G T A A C T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T