Information for 5-CGMYCGGSTRGYMAGG (Motif 11)

A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A C T G C T A G A T G C G A T C C G T A A T C G A G T C A G T C C T A G C T G A A C T G A G T C A T C G
p-value:1e-13
log p-value:-3.106e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.3 +/- 23.2bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL001.1_MTE/Jaspar

Match Rank:1
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CGMYCGGSTRGYMAGG
NCGACCGCTCCGCTCGAAA--
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CGMYCGGSTRGYMAGG
GTCACGCTTGGCTGCNCNN-
 A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CGMYCGGSTRGYMAGG
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----CGMYCGGSTRGYMAGG
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CGMYCGGSTRGYMAGG--
---GGGGCTYGKCTGGGA
 A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CGMYCGGSTRGYMAGG-
-NGTAGGTTGGCATNNN
 A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.45
Offset:2
Orientation:forward strand
Alignment:CGMYCGGSTRGYMAGG
--CGTGGGTGGTCC--
 A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.44
Offset:6
Orientation:reverse strand
Alignment:CGMYCGGSTRGYMAGG-----
------KGTTGCTAGGMAACA
 A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.44
Offset:-8
Orientation:forward strand
Alignment:--------CGMYCGGSTRGYMAGG
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.44
Offset:-5
Orientation:reverse strand
Alignment:-----CGMYCGGSTRGYMAGG
NGTCACGCTTGGCTGC-----
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G G T A C A G C T A G T C A C T G A C T G A T G C A C G T C T A G A T C G A G T C G T A C C G T A A C T G A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T A C G T A C G T