Information for 2-CRMCACCAGGGGGCGC (Motif 4)

A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
Reverse Opposite:
A C T G A T G C A C T G A G T C A G T C A G T C A G T C A G T C A C G T C T A G A T C G A C G T A C T G A C T G G A T C T A C G
p-value:1e-19
log p-value:-4.523e+01
Information Content per bp:1.762
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.9 +/- 24.2bp
Average Position of motif in Background53.8 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC-----
-GCCASCAGGGGGCGCYVNNG
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CRMCACCAGGGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CRMCACCAGGGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CRMCACCAGGGGGCGC
-CACCCCCGGGGGGG-
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC
NCCCCCCCGGGGGGN-
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CRMCACCAGGGGGCGC
-CACAGCAGGGGG---
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC
ACCCCCCCGGGGGGN-
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC
-CACAGCGGGGGGTC-
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC----
---NNNAAGGGGGCGGGNNN
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CRMCACCAGGGGGCGC
NCNCAGCGGGGGGTC-
 A T G C C T A G T G A C A G T C C G T A A T G C A G T C C G T A A C T G C T A G C T A G A C T G A C T G G T A C A T C G T A G C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T