Information for 4-ACTGCCACCTRGK (Motif 6)

C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
Reverse Opposite:
G T A C A G T C A G C T C G T A A C T G A C T G A C G T A C T G A C T G A G T C C G T A A C T G A C G T
p-value:1e-13
log p-value:-3.074e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.5 +/- 26.3bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACTGCCACCTRGK-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ACTGCCACCTRGK
--TGACACCT---
 C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ACTGCCACCTRGK
CCAACTGCCA------
 A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCCACCTRGK-----
TAGCGCCCCCTGGTGGCCA
 A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ACTGCCACCTRGK
CGACCAACTGCCATGC---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACTGCCACCTRGK
-ATGCCAACC---
 C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACTGCCACCTRGK
CCAACTGCCA------
 A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACTGCCACCTRGK---
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACTGCCACCTRGK
CTGTCTGTCACCT---
 A C G T A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCCACCTRGK
TGTCTGDCACCT---
 A C G T A C G T C G T A A G T C A C G T A C T G A G T C A G T C C G T A G T A C G T A C G C A T C T G A A C T G A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T