Information for 7-GCCTAGCAAC (Motif 6)

T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C
Reverse Opposite:
A C T G A C G T A G C T A T C G G T A C C A G T T C G A A T C G A T C G A G T C
p-value:1e-14
log p-value:-3.257e+01
Information Content per bp:1.761
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif156.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets49.5 +/- 25.9bp
Average Position of motif in Background51.6 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GCCTAGCAAC--
SCCTAGCAACAG
 T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
CCGCATAGCAACGGA
 A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
TACCATAGCAACGGT
 A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----GCCTAGCAAC-
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------GCCTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCTAGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC
AGGCCTAG----
 A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCTAGCAAC
AGCCACTCAAG
 A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCCTAGCAAC---
---TTGCAACATN
 T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAAC---
TACCCTAGTTACCGA
 A C G T A C G T T C A G A T G C A T G C A G C T G T C A A C T G A T G C T C G A C G T A T G A C A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A