Information for 11-CAGGSCTGCGGTS (Motif 14)

A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
Reverse Opposite:
T A C G C T G A T A G C G T A C T C A G A G T C G C T A A C T G A T C G A T G C A G T C C G A T A T C G
p-value:1e-9
log p-value:-2.108e+01
Information Content per bp:1.703
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif113.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets55.5 +/- 19.3bp
Average Position of motif in Background51.7 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGGSCTGCGGTS
CNAGGCCT------
 A C G T A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGGSCTGCGGTS---
-TNTCCTGCTGTGNNG
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAGGSCTGCGGTS---
-NNTCCTGCTGTGNNN
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGGSCTGCGGTS
CTAGGCCT------
 A C G T A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGGSCTGCGGTS
----GCTGTG---
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAGGSCTGCGGTS
GGGGCCGAGGCCTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGGSCTGCGGTS-
----CCTGCTGAGH
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGGSCTGCGGTS---
-TCNCCTGCTGNGNNN
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGGSCTGCGGTS
-CCCCCTGCTGTG
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGGSCTGCGGTS-----
-NNNANTGCAGTGCNNTT
 A T G C C G T A C T A G A T C G T A G C G T A C C G A T A C T G A G T C C A T G A C T G G A C T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T