Information for 5-AGGATTGATT (Motif 16)

C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G T C C G T A C G T A A C G T A G T C A G T C A C G T
p-value:1e-8
log p-value:-1.894e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 6.4bp
Average Position of motif in Background73.4 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:AGGATTGATT---
---ATTGATTYND
 C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGGATTGATT--
ATGATKGATGRC
 C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTGATT-
TTTGATTGATGN
 A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGGATTGATT---
NNANTGATTGATNNNN
 A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGGATTGATT---
NNANTGATTGATNTTN
 A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

CUX1/MA0754.1/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGGATTGATT-
-NTATCGATTA
 C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGGATTGATT---
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGGATTGATT---
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AGGATTGATT--
----TTGATTGN
 C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGATTGATT-
-NTATYGATCH
 C G T A A C T G A C T G C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C