Information for 7-TCCGGCTTTGCCC (Motif 13)

G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
Reverse Opposite:
A C T G A C T G A T C G A G T C C T G A C G T A C G T A A C T G A G T C A G T C A C T G A C T G C G T A
p-value:1e-9
log p-value:-2.104e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.2 +/- 29.6bp
Average Position of motif in Background44.7 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0077.1_Spdef_1/Jaspar

Match Rank:1
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCCGGCTTTGCCC
GTACATCCGGATTTTT--
 A C G T A C G T A C G T A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCCGGCTTTGCCC--
ATTGGACTTTGACCCC
 A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCCGGCTTTGCCC
CCCCCTGCTGTG---
 A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCCGGCTTTGCCC
NNTCCTGCTGTGNNN
 A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCCGGCTTTGCCC------
---GGGTGTGCCCAAAAGG
 G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

TFCP2/MA0145.3/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCCGGCTTTGCCC
AAACCGGTTT-----
 A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCCGGCTTTGCCC
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCCGGCTTTGCCC----
-CCGTCTTCCCCCTCAC
 G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCCGGCTTTGCCC-
----YCTTTGTTCC
 G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

SPDEF/MA0686.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCCGGCTTTGCCC
TACATCCGGGT------
 A C G T A C G T A C G T A C G T G A C T A G T C A G T C A C T G A C T G A G T C A C G T A C G T A G C T A C T G A T G C A G T C A G T C
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T