Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-126 | -2.911e+02 | 0.0000 | 364.0 | 42.13% | 4972.9 | 10.50% | motif file (matrix) |
svg |
2 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-105 | -2.426e+02 | 0.0000 | 323.0 | 37.38% | 4567.1 | 9.65% | motif file (matrix) |
svg |
3 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-99 | -2.294e+02 | 0.0000 | 229.0 | 26.50% | 2284.2 | 4.82% | motif file (matrix) |
svg |
4 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-79 | -1.837e+02 | 0.0000 | 288.0 | 33.33% | 4601.8 | 9.72% | motif file (matrix) |
svg |
5 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-78 | -1.818e+02 | 0.0000 | 225.0 | 26.04% | 2819.0 | 5.95% | motif file (matrix) |
svg |
6 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-72 | -1.679e+02 | 0.0000 | 180.0 | 20.83% | 1900.2 | 4.01% | motif file (matrix) |
svg |
7 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-70 | -1.625e+02 | 0.0000 | 192.0 | 22.22% | 2261.8 | 4.78% | motif file (matrix) |
svg |
8 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-34 | -7.914e+01 | 0.0000 | 133.0 | 15.39% | 2107.1 | 4.45% | motif file (matrix) |
svg |
9 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-24 | -5.705e+01 | 0.0000 | 49.0 | 5.67% | 384.8 | 0.81% | motif file (matrix) |
svg |
10 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-18 | -4.180e+01 | 0.0000 | 29.0 | 3.36% | 170.9 | 0.36% | motif file (matrix) |
svg |
11 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-16 | -3.865e+01 | 0.0000 | 26.0 | 3.01% | 146.1 | 0.31% | motif file (matrix) |
svg |
12 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-13 | -3.131e+01 | 0.0000 | 35.0 | 4.05% | 383.7 | 0.81% | motif file (matrix) |
svg |
13 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-12 | -2.905e+01 | 0.0000 | 26.0 | 3.01% | 222.2 | 0.47% | motif file (matrix) |
svg |
14 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-10 | -2.351e+01 | 0.0000 | 19.0 | 2.20% | 145.4 | 0.31% | motif file (matrix) |
svg |
15 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-9 | -2.226e+01 | 0.0000 | 53.0 | 6.13% | 1080.9 | 2.28% | motif file (matrix) |
svg |
16 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.997e+01 | 0.0000 | 35.0 | 4.05% | 584.8 | 1.24% | motif file (matrix) |
svg |
17 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-8 | -1.994e+01 | 0.0000 | 50.0 | 5.79% | 1055.5 | 2.23% | motif file (matrix) |
svg |
18 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-8 | -1.891e+01 | 0.0000 | 51.0 | 5.90% | 1124.9 | 2.38% | motif file (matrix) |
svg |
19 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-8 | -1.887e+01 | 0.0000 | 67.0 | 7.75% | 1698.5 | 3.59% | motif file (matrix) |
svg |
20 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-8 | -1.881e+01 | 0.0000 | 36.0 | 4.17% | 642.1 | 1.36% | motif file (matrix) |
svg |
21 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-7 | -1.806e+01 | 0.0000 | 25.0 | 2.89% | 349.0 | 0.74% | motif file (matrix) |
svg |
22 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-7 | -1.698e+01 | 0.0000 | 106.0 | 12.27% | 3364.5 | 7.11% | motif file (matrix) |
svg |
23 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.648e+01 | 0.0000 | 64.0 | 7.41% | 1696.0 | 3.58% | motif file (matrix) |
svg |
24 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.547e+01 | 0.0000 | 131.0 | 15.16% | 4568.0 | 9.65% | motif file (matrix) |
svg |
25 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-6 | -1.542e+01 | 0.0000 | 241.0 | 27.89% | 9756.0 | 20.60% | motif file (matrix) |
svg |
26 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-6 | -1.506e+01 | 0.0000 | 51.0 | 5.90% | 1275.4 | 2.69% | motif file (matrix) |
svg |
27 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-6 | -1.493e+01 | 0.0000 | 44.0 | 5.09% | 1028.3 | 2.17% | motif file (matrix) |
svg |
28 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-6 | -1.428e+01 | 0.0000 | 44.0 | 5.09% | 1054.7 | 2.23% | motif file (matrix) |
svg |
29 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-5 | -1.359e+01 | 0.0000 | 66.0 | 7.64% | 1927.8 | 4.07% | motif file (matrix) |
svg |
30 |
| OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-5 | -1.308e+01 | 0.0000 | 60.0 | 6.94% | 1717.2 | 3.63% | motif file (matrix) |
svg |
31 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.271e+01 | 0.0000 | 47.0 | 5.44% | 1233.8 | 2.61% | motif file (matrix) |
svg |
32 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.193e+01 | 0.0001 | 23.0 | 2.66% | 427.7 | 0.90% | motif file (matrix) |
svg |
33 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-5 | -1.173e+01 | 0.0001 | 37.0 | 4.28% | 907.1 | 1.92% | motif file (matrix) |
svg |
34 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.171e+01 | 0.0001 | 28.0 | 3.24% | 594.5 | 1.26% | motif file (matrix) |
svg |
35 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-5 | -1.160e+01 | 0.0001 | 73.0 | 8.45% | 2343.4 | 4.95% | motif file (matrix) |
svg |
36 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.158e+01 | 0.0001 | 52.0 | 6.02% | 1484.2 | 3.13% | motif file (matrix) |
svg |
37 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-4 | -1.107e+01 | 0.0002 | 70.0 | 8.10% | 2254.4 | 4.76% | motif file (matrix) |
svg |
38 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.050e+01 | 0.0003 | 15.0 | 1.74% | 228.0 | 0.48% | motif file (matrix) |
svg |
39 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-4 | -1.040e+01 | 0.0003 | 19.0 | 2.20% | 345.7 | 0.73% | motif file (matrix) |
svg |
40 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-4 | -1.010e+01 | 0.0004 | 64.0 | 7.41% | 2070.9 | 4.37% | motif file (matrix) |
svg |
41 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.852e+00 | 0.0005 | 51.0 | 5.90% | 1546.4 | 3.27% | motif file (matrix) |
svg |
42 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -9.136e+00 | 0.0009 | 42.0 | 4.86% | 1226.9 | 2.59% | motif file (matrix) |
svg |
43 |
| Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.905e+00 | 0.0011 | 23.0 | 2.66% | 522.3 | 1.10% | motif file (matrix) |
svg |
44 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -8.788e+00 | 0.0013 | 274.0 | 31.71% | 12385.0 | 26.16% | motif file (matrix) |
svg |
45 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -8.371e+00 | 0.0019 | 37.0 | 4.28% | 1071.5 | 2.26% | motif file (matrix) |
svg |
46 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -8.174e+00 | 0.0022 | 23.0 | 2.66% | 550.4 | 1.16% | motif file (matrix) |
svg |
47 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-3 | -8.146e+00 | 0.0022 | 106.0 | 12.27% | 4139.6 | 8.74% | motif file (matrix) |
svg |
48 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -7.828e+00 | 0.0030 | 16.0 | 1.85% | 323.1 | 0.68% | motif file (matrix) |
svg |
49 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.615e+00 | 0.0037 | 59.0 | 6.83% | 2049.2 | 4.33% | motif file (matrix) |
svg |
50 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-3 | -7.424e+00 | 0.0043 | 160.0 | 18.52% | 6847.9 | 14.46% | motif file (matrix) |
svg |
51 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.236e+00 | 0.0051 | 27.0 | 3.12% | 741.5 | 1.57% | motif file (matrix) |
svg |
52 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.189e+00 | 0.0053 | 26.0 | 3.01% | 705.4 | 1.49% | motif file (matrix) |
svg |
53 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.903e+00 | 0.0069 | 251.0 | 29.05% | 11554.0 | 24.40% | motif file (matrix) |
svg |
54 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.860e+00 | 0.0071 | 39.0 | 4.51% | 1248.2 | 2.64% | motif file (matrix) |
svg |
55 |
| ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.759e+00 | 0.0077 | 5.0 | 0.58% | 42.4 | 0.09% | motif file (matrix) |
svg |
56 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.567e+00 | 0.0091 | 31.0 | 3.59% | 937.8 | 1.98% | motif file (matrix) |
svg |
57 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -6.521e+00 | 0.0094 | 203.0 | 23.50% | 9164.3 | 19.35% | motif file (matrix) |
svg |
58 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.402e+00 | 0.0104 | 25.0 | 2.89% | 707.7 | 1.49% | motif file (matrix) |
svg |
59 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -6.213e+00 | 0.0124 | 215.0 | 24.88% | 9838.3 | 20.78% | motif file (matrix) |
svg |
60 |
| Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-2 | -6.144e+00 | 0.0130 | 14.0 | 1.62% | 311.0 | 0.66% | motif file (matrix) |
svg |
61 |
| NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -6.121e+00 | 0.0131 | 8.0 | 0.93% | 123.1 | 0.26% | motif file (matrix) |
svg |
62 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-2 | -5.996e+00 | 0.0146 | 57.0 | 6.60% | 2109.5 | 4.45% | motif file (matrix) |
svg |
63 |
| OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.910e+00 | 0.0157 | 4.0 | 0.46% | 31.7 | 0.07% | motif file (matrix) |
svg |
64 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -5.848e+00 | 0.0164 | 9.0 | 1.04% | 159.0 | 0.34% | motif file (matrix) |
svg |
65 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.835e+00 | 0.0164 | 48.0 | 5.56% | 1720.6 | 3.63% | motif file (matrix) |
svg |
66 |
| ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.676e+00 | 0.0189 | 14.0 | 1.62% | 328.3 | 0.69% | motif file (matrix) |
svg |
67 |
| HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-2 | -5.569e+00 | 0.0207 | 15.0 | 1.74% | 368.0 | 0.78% | motif file (matrix) |
svg |
68 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.396e+00 | 0.0243 | 72.0 | 8.33% | 2871.5 | 6.06% | motif file (matrix) |
svg |
69 |
| MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-2 | -5.384e+00 | 0.0243 | 96.0 | 11.11% | 4022.4 | 8.49% | motif file (matrix) |
svg |
70 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.321e+00 | 0.0254 | 6.0 | 0.69% | 84.7 | 0.18% | motif file (matrix) |
svg |
71 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-2 | -5.311e+00 | 0.0254 | 5.0 | 0.58% | 59.0 | 0.12% | motif file (matrix) |
svg |
72 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.305e+00 | 0.0254 | 41.0 | 4.75% | 1457.5 | 3.08% | motif file (matrix) |
svg |
73 |
| Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer | 1e-2 | -5.227e+00 | 0.0268 | 18.0 | 2.08% | 496.4 | 1.05% | motif file (matrix) |
svg |
74 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-2 | -5.090e+00 | 0.0303 | 9.0 | 1.04% | 178.4 | 0.38% | motif file (matrix) |
svg |
75 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -5.035e+00 | 0.0316 | 63.0 | 7.29% | 2492.6 | 5.26% | motif file (matrix) |
svg |
76 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -5.021e+00 | 0.0316 | 7.0 | 0.81% | 118.2 | 0.25% | motif file (matrix) |
svg |
77 |
| LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer | 1e-2 | -4.903e+00 | 0.0351 | 69.0 | 7.99% | 2792.1 | 5.90% | motif file (matrix) |
svg |
78 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -4.796e+00 | 0.0385 | 6.0 | 0.69% | 94.9 | 0.20% | motif file (matrix) |
svg |
79 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.782e+00 | 0.0386 | 24.0 | 2.78% | 764.3 | 1.61% | motif file (matrix) |
svg |
80 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-2 | -4.764e+00 | 0.0388 | 53.0 | 6.13% | 2057.3 | 4.34% | motif file (matrix) |
svg |