Information for 5-AAGGAACAATGAG (Motif 8)

G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
Reverse Opposite:
A G T C C G A T A G T C G T C A C G A T A C G T A T C G A C G T A C G T T G A C G T A C G A C T A C G T
p-value:1e-17
log p-value:-4.074e+01
Information Content per bp:1.782
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif54.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets56.1 +/- 24.8bp
Average Position of motif in Background49.2 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGGAACAATGAG---
AATGAACAATGGAATT
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AAGGAACAATGAG
--GGAACAAAGR-
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AAGGAACAATGAG--
TCACGGAACAATAGGTG
 A C G T A C G T G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AAGGAACAATGAG
---GAACAATGGN
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AAGGAACAATGAG
--VRRACAAWGG-
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AAGGAACAATGAG
--VRAACAATGG-
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AAGGAACAATGAG--
NNNNNGAACAATTGANN
 A C G T A C G T G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AAGGAACAATGAG
----GACAATGNN
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AAGGAACAATGAG
--AAAACAATGG-
 G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAGGAACAATGAG--
TTTAGAACAATAAAAT
 A C G T G T C A C G T A C A T G A C T G G T C A C G T A T A G C C G T A C G T A A C G T A C T G C G T A C T A G A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T