Information for 6-GTTGCCATGG (Motif 6)

C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G
Reverse Opposite:
G A T C A G T C G C T A C G A T T C A G C T A G T G A C T G C A C T G A G A T C
p-value:1e-18
log p-value:-4.324e+01
Information Content per bp:1.608
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.38%
Number of Background Sequences with motif1385.3
Percentage of Background Sequences with motif2.93%
Average Position of motif in Targets50.0 +/- 26.3bp
Average Position of motif in Background49.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GTTGCCATGG----
GTTGCCATGGNAAC
 C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGG---
NGTTGCCATGGCAA
 A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGG---
GGTTGCCATGGCAA
 A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCATGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGG
CTGTTGCTAGGS
 A C G T A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGG-----
GTTGCCATGGCAACM
 C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.81
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCCATGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGG----
CGGTTGCCATGGCAAC
 A C G T A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCATGG--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGG-----
CGTTGCCATGGCAACN
 A C G T C T A G G A C T A C G T A C T G G A T C A G T C G C T A C G A T C T A G C T A G A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G